Showing results for: [ Varghese, Temi ]
This our GeoGenetics prototype on phylogeography and genetics to use a large array of data. Using Chado (GMOD.org) and web-services we have built most of the tool allowing for an interaction of geo-lo... morecated samples with an unlimited array of data types. The data can be hosted locally or from any other server that serves the GeoJSON format.
An added capability is the intersection of these data with more than 200 environmental layers derived from the Atlas of Living Australia.
A further prototype capability is the ability to search for RNAi matches, as developed for a USDA proposal called "Reducing off-target effects of RNAi pesticides via functional genomics".
Cont to TCP01 Dissecting Adaptive - GeoGenetics software development - Published 06 Jan 2015
Whether working on a model or non-model species for biomedical, economical or evolutionary research, next-generation sequencing has enabled biologists to rapidly generate a reference sequence for down... morestream applications and hypotheses generation. With the exception of a limited number of species, functional annotation is conducted by in-silico experiments based on sequence similarity. Some groups are also enriching their data with expression studies. JAMp is a platform that allows biologists to reclaim the analysis of transcript reconstruction experiments by providing an automated process for generating functional annotations and a user-friendly overview of these in-silico experiments. The entire software is built so that novice command-line users can take a transcriptome assembly and generate websites like those found in our demo.
Cont to TCP01 Dissecting Adaptive - genome annotation software development - Published 06 Jan 2015