Showing results for: [ Stephenson, Sarah ]
18S rDNA, 16S rDNA, and diatom 18S v4 rDNA amplicons from sediment DNA collected from Vavouto Bay New Caledonia.
NiPERA - Analysis of sediment nickel concentrations and benthic community composition - Published 17 Oct 2019
The data describes the microbiome community of the coral Acropora mucricata following exposure to nickel and copper (separately) for 4 days under controlled laboratory conditions
NiPERA - The effect of dissolved copper and nickel on the adult coral Acropora muricata and its microbiome - Published 16 Apr 2019
Raw RNA sequences from 27 individual greentail prawns (Metapenaeus bennettae) collected from St Vincent Gulf in South Australia in February 2016. Prawns were placed in tanks with either clean sediment... more or sediment spiked with 2 mg/kg of light-weight crude oil and exposed for 24 and 90 hrs before being transferred to clean sediment tanks for a further 90 hrs. Five prawns were removed from each tank at each of the different time periods. The aprrox. 10 mg of hepatopancreas was removed and place in RNAlater before freezing at -80. RNA libraries were prepared and sequenced by the Ramaciotti Centre (Sydeny, Australia), where libraries were prepared using 1 µg RNA from 27 individuals following Illumina protocols, and sequenced on two HiSeq2500 100bp single-end lanes in accordance with the manufacturer’s protocols. less
Chevron_GAB_Phase 2 - - Published 14 Dec 2018
RNA Seq reads (Illumina HiSeq 2500) from the liver and gill of spotted dragonet (Repomucenus calcaratus) exposed to either control conditions of 2 mg/kg unweathered crude oil. Fish tissues were colle... morected 24 and 90 hours into exposure as well as 20 and 90 hours into recovery.less
Chevron_GAB_Phase 2 - determining monitoring targets - Published 18 Jul 2018
Four 10 cm and four 6 cm diameter sediment cores were collected at each of the study sites in the Gippsland area, Victoria. Cores were collected by hand and involved divers pushing the core into the s... moreediment to a depth of 10 cm depth and capping the core at both ends using rubber stoppers. At each site 4 cores of each size were collected for bacteria and infauna, replicated on 2 spatial scales, 1 m apart and 10 m apart.
Sediment cores have been processed and analysed for infaunal diversity and abundance (top 10 cm of caore), bacteria DNA (0-2 cm core depth and 8-10 cm core depth) and infauna DNA (top 10 cm of cores); XRD, TC/TOC/TN and particle size will be analysed for some cores. less
Assessment of MMV methodologies for subsea CCS: seabed and water column monitoring - Diver Deployed Sediment Cores - Published 20 Jun 2018
16S rRNA gene amplification and sequencing were performed to assess the effects of uranium on sediment microbial communities. A total of 12 treatments along a uranium concentration gradient of 0 - 4,0... more00 mg/kg were interrogated, with four replicates per treatment. Data here include: raw MiSeq sequences (paired-end 250 base reads) as well as a mapping file for demultiplexing and a fasta file containing sequences of OTUs not deposited at DDBJ/ENA/GenBank (due to poor sequence similarity with existing entries). less
Estuarine Health Assessment - Next generation sequencing - Published 13 May 2016
The data encompasses a benthic survey of the East and South Alligator Rivers, Kakadu National Park. Each estuary was survey on two occasions (wet and dry), encompassing eight sites from the mouth to t... morehe road crossings.
1177.2 Estuarine Health Assessment - Experiment - Published 27 Mar 2015