Showing results for: [ McWilliam, Sean ]
Unfiltered variants from 935 sheep genomes
Acquired - - Published 26 Jul 2019
High quality variants from 935 sheep genomes
raw sequence and variant files from genome sequencing of Abalone species.
Jade Tiger Abalone selective breeding program: Enhancing genetic gains and securing program sustainability - - Published 29 May 2018
SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed.
SIP 52 Salmon Genome & Tailored tools fo - - Published 29 Jan 2018
In the absence of detailed functional annotation for any livestock genome, we used comparative genomics to predict ovine regulatory elements using human data. Reciprocal liftOver was used to predict t... morehe ovine genome location of ENCODE promoters and enhancers, along with 12 chromatin states built using 127 diverse epigenome.
Here we make available the following files:
a) Sheep_epigenome_predicted_features.tar.gz: contains the final reciprocal best alignment from ENCODE proximal as well as chromHMM ROADMAP features. The result of reciprocal liftOver.
b) liftOver_sheep_temporary_files.tar.gz: We have
added a new tar file with liftOver temporary files
i) LiftOver temporary files mapping human to sheep,
ii) LiftOver temporary files mapping sheep back to human and
iii) Dictionary files containing the link between human to sheep coordinates for exact best-reciprocal files.
OCE Post Doc - Conseq Animal Domesticati - - Published 09 Nov 2017
The collection contains the genome sequence of a diverse collection of sheep. For each animal, sequence reads are available to a depth of approximately 10 fold genome coverage. Sequence reads are made... more available in BAM format. Sequence polymorphisms are made available in VCF format following comparison of each animal’s sequence to the sheep reference genome assembly (v3.1). To assist users with interpretation of the collection, the reference genome (FA format) and genome feature files (GFF3 format) are included for viewing using software such as the Integrative Genome Viewer (IGV).less
CLSD 1206.1 NextGenBreedOpt C2012/5905 - Genome sequencing - Published 22 Jul 2013