Showing results for: [ Jayaswal, Vivek ]
HAL-HAS is a program package, comprising HAL-BU, HAL-TD, and HAS, that was written to allow users to infer an optimal model of evolution for a given data set, a given tree.
We introduce a family of n... moreon-stationary and non-homogeneous mixture models that approximate the rate Heterogeneity Across Lineages (HAL) and the rate Heterogeneity Across Sites (HAS) without the assumption of an underlying predefined statistical distribution.less
CLSD Strategic: Solving Biodiversity Cha - Bioinformatics Software - Published 02 Jun 2017
A program to simulate the evolution of DNA under the mixture models of heterogeneity across lineage and heterogeneity across sites.
Hetero was written to facilitate the development and testing of phy... morelogenetic methods.
In particular, Hetero 2 allows the user to generate nucleotide sequences on a phylogenetic tree under complex conditions.
The complexity of the conditions are such that the evolutionary process can differ from site to site in the DNA as well as from edge to edge in the phylogenetic tree, with the evolutionary process being the variable.
The output is a set of alignments of nucleotides.
For further details, see the manual, which is included with the software.less