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Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (Vigna unguiculata (L.) Walp). For each of two varieties of cowpea (IT97K-499-35, IT86D
In the absence of detailed functional annotation for any livestock genome, we used comparative genomics to predict ovine regulatory elements using human data. Reciprocal liftOver was used to predict t
This data set contains the genomes of Helicoverpa armigera and Helicoverpa zea and the relevant annotations.
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution an
Files associated with this project:
== MiSeq PE and Mitochrondrial reads ==
== HiSeq PE Data ==
= Mitochondrial genome =
A collection of raw and analysed sequence resources across several Hieracium species and genotypes related to the study of apomixis. This collection was generated by the Asexual Seed Formation researc
Eagle is an R package for genome-wide association mapping
Sphingobium yanoikuyae strain_B2_R1_001.fastq.gz
Sphingobium yanoikuyae strain_B2_R2_001.fastq.gz
*Velvet assembly as scaffolds or contigs*
An increased number of genomes are being made public but few individual research are willing to take ownership of their own data. Indeed, the current model is for genome sequences to be handled by seq
Example input files suitable for analysis by Eagle. The data were obtained from a large genome-wide association study (GWAS) performed in outbred mice and published on the Heterogeneous Stock Mouse we
Genomic information for Cairneyella variabilis including:
- All protein calls from AUGUSTUS 2.6.1 (generated 24-10-2013)
- cdsexons calls from AUGUSTUS 2.6.1 (generated 24-10-2013)
- coding sequence
Genomic information for Bacillus pumilus 'Fairview' including: all contigs Velvet split by base pair size.
The collection contains the genome sequence of a diverse collection of sheep. For each animal, sequence reads are available to a depth of approximately 10 fold genome coverage. Sequence reads are made
Whole genome sequencing was performed on Gamarada debralockiae gen. nov. sp. nov. Following sequence assemblies, contigs greater than 1,000 nucleotides were subjected to gene annotation and analysis.
Whether working on a model or non-model species for biomedical, economical or evolutionary research, next-generation sequencing has enabled biologists to rapidly generate a reference sequence for down
DNA samples from sheep from all over the world representing 3,500 samples from 90 breeds. This collection is held on behalf of the International Sheep Genomics Consortium (ISCG).
Identification of presence of the VERNALIZATION1 (VRN1) and VERNALIZATION2 (VRN2) novel alleles in varieties and landraces of Barley seed from the Australian Winter Cereal Collection (AWCC). The data
454 16S and 18S amplicon data associated with the manuscript "Comparison of biofilm ecology supporting growth of individual Naegleria species in a drinking water distribution system."
Identification of presence of the VERNALIZATION1 (VRN1) novel alleles in varieties and landraces of Wheat seed from the Australian Winter Cereal Collection (AWCC). The data was collected 2005-06. See
This our GeoGenetics prototype on phylogeography and genetics to use a large array of data. Using Chado (GMOD.org) and web-services we have built most of the tool allowing for an interaction of geo-lo
A collection of DNA and deduced protein sequences corresponding to the protein-coding transcriptome of adult specimens of the freshwater atyid shrimp Paratya australiensis. The sequences are derived f
Supplementary data for the BMC Genomics paper titled: "Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia"
Supplementary data for the BMC Genomics paper titled: "Identification and Characterization of Three Chemosensory Receptor Families in the Cotton Bollworm Helicoverpa armigera"
We describe two versions of COBRA-seq: First, Genome-Wide COBRA (GW-COBRA) that uses PCR to exponentially amplify the sequencing library fragments after linker ligation. Second, Linear Amplification C
The DEW pipeline is a one command line solution that aligns reads, corrects expression biases (eXpress), TMM normalizes (edgeR) and produces FPKM values that are then visualized with pretty ggplot gra
The aim of the project was to generate a high-quality reference transcriptome for Murray-Darling rainbowfish to enable the design of genome-wide expression analysis strategies (such as microarrays) an