Showing results for: [ transcriptome ]
Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (Vigna unguiculata (L.) Walp). For each of two varieties of cowpea (IT97K-499-35, IT86D... more-1010) this collections contains the following datasets :
i) genomic survey assemblies based on Illumina sequencing
ii) transcriptome assemblies
iii) raw DNA and RNA sequence data feeding into the above assemblies
iv) In-silico gene predictions and predicted gene sequences derived from IT86D-1010 and IT97K-499-35
v) Mapping to the Vigna unguiculata v1.0 reference genome (http://phytozome.jgi.doe.gov/)
Capturing Heterosis for Smallholders, OPP1076280 - Crop genomics - Published 06 Jun 2018
Supplementary data for the BMC Genomics paper titled: "Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia"
1023.1 FF Cybernose - strategic - Calliphora stygia transcriptome - Published 02 Mar 2018
These files illumina sequencing reads representing the hepatic transcriptome of wild caught barramundi from Barratta Creek (353-360), N. Johnstone River (402-406) or the Wenlock Catchments (WC1-5; WC5... more5,56).less
Legacy data - Transcriptome characterization - Published 25 Nov 2016
De novo assembled transcriptome was developed from leaf samples of wild-type (wt) and high oil (HO) parent (plants metabolically engineered to produce oil in leaf tissues). This was used as a referenc... moree for differential expression analysis of wt vs HO.less
Oil Content - Molecular responses underlying engineered lipid synthesis in leaf tissues - Published 17 Jun 2016
These files illumina sequencing reads representing the hepatic transcriptome of wild caught barramundi from the Daintree River (fish numbers 2-7) or the Tully River (fish numbers 97-104).
Estuarine Health Assessment - Next generation sequencing - Published 03 Sep 2015
Data was generated for NLMP project entitled "Culture independent metagenomic approaches for understanding the functional metabolic potential of methanogen communities in ruminant livestock"
Metagenomic approaches for understanding - Rumen Methanobacteriales metagenomes - Published 19 Jun 2015
Description of Triadica sebifera trnascripts mapped to Ricinus communis transcript sequences downloaded from Ricinus PlantGDB (http://www.plantgdb.org/RcGDB/)
CLSD EF-RP3 CDF25.1 CESRE TSOP 2013/2014 - Annotation and Taxnomic distribution of Chinese tallow (Triadica sebifera) transcriptome - Published 15 Apr 2015
Transcriptome assembly of reads generated individually from the fruit coat, tallow and seed tissues of Chinese tallow fruits harvested at stage 4 (before maturity). The un-assembled reads from individ... moreual tissues were deposited at NCBI-Short Read Archive under accession numbers SRR1653572, SRR1653574 and SRR1653576. The assembled transcripts were examined for simple sequence repeat and single nucleotide polymorphisms. Identified polymorphisms are deposited here to provide a resource for genetic development of Chinese tallow.less
CLSD EF-RP3 CDF25.1 CESRE TSOP 2013/2014 - Data mining for identification of molecular markers from de novo assembled trancriptome - Published 08 Dec 2014
Transcriptome assembly of reads generated individually from the fruit coat, tallow and seed tissues of Chinese tallow fruits harvested at stage 4 (before maturity). The un-assembled reads from individ... moreual tissues were deposited at NCBI-Short Read Archive under accession numbers SRR1653572, SRR1653574 and SRR1653576.less
CLSD EF-RP3 CDF25.1 CESRE TSOP 2013/2014 - experiment - Published 02 Dec 2014
RNA was extracted from 6 weeks old N. benthamiana leaves and Illumina sequencing was carried for de novo transcriptome assembling.
The assembled transcripts were annotated across various databaes. Th... moree contig sequences and the description of their annotations are made available in this collectionless
1020.2 Oil Content - MGAT1 senescence transcriptome article - Published 01 Oct 2013
Total RNA extracted from liver from 12 individuals and pooled in equal quantities. Individual RNA was from BAR 10-3 timecourse post feeding experiment. Liver RNA extracted from different times after f... moreeeding.
Pooled animals: 2 animals (T0-J and K) - not fed; 3 animals; 1hr (T60-I,J,K) and 2hrs (T120-I,J,K) after feeding (6 total); 1 animal - 4hrs (T4-I), 8hrs (T8-I), 12hrs (T12-I) and 24hrs (T24-I) after feeding
Generated thousands of unique barramundi sequences for gene discovery in fastq format. Used for de novo transcriptome assembly for barramundi liver.
Lab Notebook: LN2010/1717 p85less
CLSD Feed Tech Novel Feeds - Transcriptomics - Published 16 Aug 2013
Raw sequencing reads and final assembled contigs associated with the 454 sequencing of the toxicant responsive transcriptome of the amphipod Melita plumulosa. Original .fasta and .qual files are incl... moreuded, as well as the contigs associated with the final assembly as desribed in the paper (Hook et al., to be submitted, BMC Genomics)less
1177.2 Estuarine Health Assessment - Experiment - Published 24 May 2013