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The effects of dissolved and particulate nickel on corals and their microbiome

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About this Collection

The effects of dissolved and particulate nickel on corals and their microbiome


The data describes the microbiome community of the coral Acropora muricata following exposure to dissolved nickel, nickel contaminanted sediments and sediments alone for 7 days under controlled laboratory conditions


Environmental Sciences not elsewhere classified


https://doi.org/10.25919/5c77eb0d0ca21


Mar 2017


Feb 2019


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Coral microbiome sediments DNA metabarcoding Metals


Amplicon libraries were prepared for sequencing using TruSeq PCR-free kit. The libraries were run as two separate Illumina® Miseq sequencing runs, 2x 300 bp for ITS2 rDNA, 2x 250bp for 16SrDNA and 2x 150bp for 18SrDNA. Sequenced data were processed using a custom pipeline (Greenfield Hybrid Amplicon Pipeline, GHAP) which is based on USEARCH tools (Edgar, 2013). The pipeline is available at https://doi.org/10.4225/08/59f98560eba25.


School of Chemistry, University of Wollongong, School of Environment, Science and Engineering, Southern Cross University, Department of Biological Sciences, Macquarie University, CSIRO Land and Water, CSIRO Energy, North Ryde, National Sea Simulator,


CSIRO Data Licence


CSIRO (Australia), University of Wollongong (Australia), Southern Cross University (SCU) (Australia), Macquarie University (Australia), Australian Institute of Marine Sciences (Australia)


Gissi, Francesca; Reichelt-Brushett, Amanda; Stauber, Jenny; Gillmore, Megan; Chariton, Anthony; Golding, Lisa; Greenfield, Paul; Humphrey, Craig; Severati, Andrea; Jolley, Dianne (2019): The effects of dissolved and particulate nickel on corals and their microbiome. v1. CSIRO. Data Collection. https://doi.org/10.25919/5c77eb0d0ca21


All Rights (including copyright) CSIRO 2019.


The metadata and files (if any) are available to the public.

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About this Project

NiPERA


This project has investigated the toxicity of nickel to tropical marine biota. The data uploaded here presents findings on the effect of nickel and sediments to adult corals and their microbiome.


Jenny Stauber


The effects of dissolved and particulate nickel on corals and their microbiome


The effects of dissolved and particulate nickel on corals and their microbiome


Experiment


Francesca Gissi


Amanda Reichelt-Brushett


Jenny Stauber


Megan Gillmore


Anthony Chariton


Lisa Golding


Paul Greenfield


Craig Humphrey


Andrea Severati


Dianne Jolley


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