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Homo version 1.3

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About this Collection

Homo version 1.3


A program for analysing compositional heterogeneity across aligned sequence data. Most model-based molecular phylogenetic methods assume evolution under stationary, reversible, and globally homogeneous conditions, implying that it would be unwise to use these methods if the data evolved under more complex conditions. Homo allows users to test whet... more


Bioinformatics Bioinformatics Software


https://doi.org/10.4225/08/5a56c7a9e4c2a


CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400

Homo 1.3 Software Bioinformatics nucleotide sequences phylogenetic tree


:

Homo code repository on GitHub

:

Rouse GW, Jermiin LS, Wilson NG, Eeckhaut I, Lanterbecq D, Oji T, Young CM, Browning T, Cisternas P, Helgen LE, Stuckey M, Messing CG. 2013. Fixed, free and fixed: The fickle phylogeny of extant Crinoidea (Echinodermata) and their Permian-Triassic origin. Mol. Phylogen. Evol. 66, 161-181.

Attribution

Homo-1.3_Licence.pdf


This software was developed by Lars S Jermiin while employed at CSIRO and the University of Sydney. Currently, LSJ is at Research School of Biology, The Australian National University, Acton, ACT 2601, Australia (lars.jermiin@anu.edu.au). Homo uses four functions (i.e., xGaussian_Distribution_Tail, xChi_Square_Distribution_Tail, Sum_Poisson_Terms, and Sum_Over_Odd_Terms) from two source code files (i.e., gaussian_distribution_tail.c, and chi-square_distribution_tail.c) written by Dr Richard L. Horn (athretprogr@gmail.com). Dr Horn granted CSIRO and USYD a license to use these source code files without restrictions. The functions provided by Dr Horn replace some of the functions made available to the public from his Mathematics Source Library C & ASM (http://www.mymathlib.com).


CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)


CSIRO (Australia), University of Sydney (Australia)


Jermiin, Lars (2017): Homo version 1.3. v1. CSIRO. Software Collection. https://doi.org/10.4225/08/5a56c7a9e4c2a


All Rights (including copyright) CSIRO, University of Sydney 2017.


The metadata and files (if any) are available to the public.

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More about this Collection

Tested on Linux, MacOS and Windows


C


Linux/MacOS/Windows


1.3


About this Project

CLSD Strategic: Solving Biodiversity Cha


We generate knowledge on the mechanistic links and synergistic interactions between landscape change, species invasions and native species resilience in terrestrial ecosystems. Working on both natural and agricultural systems, we undertake research and develop theory to underpin more effective policy and management actions for conservation, invasio... more


Bruce Webber


Bioinformatics Software


Bioinformatics software previously made available from the CSIRO ICT and Services website.


Modelling


Lars Jermiin


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