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AliStat version 1.3

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About this Collection

AliStat version 1.3


AliStat has been written to allow users to evaluate how complete their multiple sequence alignments (MSA) of nucleotides or amino acids are. In particular, AliStat allows a user to generate four useful metrics (i.e. the completeness of an MSA (Ca), of a row in an MSA (Cr), of a column in an MSA (Cc), and of homologous sites in a sub-alignment of s... more


Bioinformatics Bioinformatics Software


https://doi.org/10.4225/08/59309da8368e1


CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400

AliStat Software Bioinformatics multi sequence alignments (MSA) phylogenetics phylogenomics


:

AliStat code repository on GitHub

:

Vivek Jayaswal, Thomas K.F. Wong, John Robinson, Leon Poladian, Lars S. Jermiin; Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages. Syst Biol 2014; 63 (5): 726-742. doi: 10.1093/sysbio/syu036

Attribution

Open-Source-Software-License-Agreement-AliStat.pdf


This software was developed by the bioinformatics and phylogenomics team in Ecosystem Sciences, The Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australia. This project is a collaboration between the Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australia, and ZFMK, Zentrum für Molekulare Biodiversitätsforschung (zmb), Bonn, Germany.


CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)


CSIRO (Australia)


Wong, Thomas KF; Kalyaanamoorthy, Subha; Meusemann, Karen; Yeates, David; Misof, Bernhard; Jermiin, Lars (2014): AliStat version 1.3. v1. CSIRO. Software Collection. https://doi.org/10.4225/08/59309da8368e1


All Rights (including copyright) CSIRO 2014.


The metadata and files (if any) are available to the public.

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More about this Collection

Tested on Linux and MacOS


C++


Linux/MacOS


1.3


About this Project

CLSD Strategic: Solving Biodiversity Cha


We generate knowledge on the mechanistic links and synergistic interactions between landscape change, species invasions and native species resilience in terrestrial ecosystems. Working on both natural and agricultural systems, we undertake research and develop theory to underpin more effective policy and management actions for conservation, invasio... more


Bruce Webber


Bioinformatics Software


Bioinformatics software previously made available from the CSIRO ICT and Services website.


Modelling


Thomas KF Wong


Subha Kalyaanamoorthy


Karen Meusemann


David Yeates


Bernhard Misof


Lars Jermiin


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