AliStat version 1.3

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About this Collection

AliStat version 1.3

AliStat has been written to allow users to evaluate how complete their multiple sequence alignments (MSA) of nucleotides or amino acids are. In particular, AliStat allows a user to generate four useful metrics (i.e. the completeness of an MSA (Ca), of a row in an MSA (Cr), of a column in an MSA (Cc), and of homologous sites in a sub-alignment of s... more

Bioinformatics Bioinformatics Software

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AliStat Software Bioinformatics multi sequence alignments (MSA) phylogenetics phylogenomics


AliStat code repository on GitHub


Vivek Jayaswal, Thomas K.F. Wong, John Robinson, Leon Poladian, Lars S. Jermiin; Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages. Syst Biol 2014; 63 (5): 726-742. doi: 10.1093/sysbio/syu036



This software was developed by the bioinformatics and phylogenomics team in Ecosystem Sciences, The Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australia. This project is a collaboration between the Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australia, and ZFMK, Zentrum für Molekulare Biodiversitätsforschung (zmb), Bonn, Germany.

CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)

CSIRO (Australia)

Wong, Thomas KF; Kalyaanamoorthy, Subha; Meusemann, Karen; Yeates, David; Misof, Bernhard; Jermiin, Lars (2014): AliStat version 1.3. v1. CSIRO. Software Collection.

All Rights (including copyright) CSIRO 2014.

The metadata and files (if any) are available to the public.

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More about this Collection

Tested on Linux and MacOS




About this Project

CLSD Strategic: Solving Biodiversity Cha

We generate knowledge on the mechanistic links and synergistic interactions between landscape change, species invasions and native species resilience in terrestrial ecosystems. Working on both natural and agricultural systems, we undertake research and develop theory to underpin more effective policy and management actions for conservation, invasio... more

Bruce Webber

Bioinformatics Software

Bioinformatics software previously made available from the CSIRO ICT and Services website.


Thomas KF Wong

Subha Kalyaanamoorthy

Karen Meusemann

David Yeates

Bernhard Misof

Lars Jermiin

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