Fungal genomics - Aspergillus hancockii

Collection Title:

Fungal genomics - Aspergillus hancockii

Collection Description:

Files associated with this project: **Sequencing reads** == MiSeq PE and Mitochrondrial reads == - FGS19M_fastq.7z == HiSeq PE Data == - DMLFGS19H_fastq.7z **Assemblies** = Mitochondrial genome = - A_hancockii_mito_complete.fa (complete mitochrondrial genome) = Nuclear genome = - FRR3425_A_hancockii_noMITO_min_200.fasta (contigs > 200bp) - ... moreFRR3425_A_hancockii_noMITO_belowCutoff_200.fasta (contigs < 200bp) **Gene Calls (AUGUSTUS)** - FRR3425.outfile (GFF) - FRR3425.outfile.aa (Amino acid calls for genes) - FRR3425.outfile.cdexons (Exons) - FRR3425.outfile.codingseq (Coding seqs) **dbCAN results** - dbCAN_results.xlsx less

Field of Research:

Genomics ;  Mycology

DOI:

https://doi.org/10.4225/08/586db72f0b1bb

Start Date:

2013

End Date:

2015

Contact:David Midgley
 David.Midgley@csiro.au
Keywords:

Aspergillus ;  Trichcomaceae ;  Aspergillus hancockii ;  Genomics

Lineage:

Fungal isolation DNA extraction --> Library preparation --> Illumina (both HiSeq and MiSeq) --> Bioinformatics (assembly, gene calling, dbCAN)

Credit:

John I. Pitt, Lene Lange, Alastair E. Lacey, Daniel Vuong, David J. Midgley, Paul Greenfield, Mark Bradbury, Ernest Lacey, Peter K. Busk, Bo Pilgaard, Yit-Heng Chooi and Andrew M. Piggott

Licence:

Creative Commons Attribution 4.0 International Licence

Organisations:

CSIRO (Australia)

Attribution Statement:

Midgley, David; Bradbury, Mark; Greenfield, Paul (2016): Fungal genomics - Aspergillus hancockii. v3. CSIRO. Data Collection. https://doi.org/10.4225/08/586db72f0b1bb

Rights Statement:

All Rights (including copyright) CSIRO 2016.

Access:

The metadata and files (if any) are available to the public.