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GeoGenetics Wizard Drupal module
This our GeoGenetics prototype on phylogeography and genetics to use a large array of data. Using Chado (GMOD.org) and web-services we have built most of the tool allowing for an interaction of geo-located samples with an unlimited array of data types. The data can be hosted locally or from any other server that serves the GeoJSON format.
An adde... mored capability is the intersection of these data with more than 200 environmental layers derived from the Atlas of Living Australia.
A further prototype capability is the ability to search for RNAi matches, as developed for a USDA proposal called "Reducing off-target effects of RNAi pesticides via functional genomics".
GPLv3 Licence with CSIRO Disclaimer
CSIRO (Australia), University of Western Sydney (Australia)
Papanicolaou, Alexie; Varghese, Temi (2014): GeoGenetics Wizard Drupal module. v1. CSIRO. Software Collection.
All Rights (including copyright) CSIRO Australia 2014.
The metadata and files (if any) are available to the public.
Drupal 6; Apache
Cont to TCP01 Dissecting Adaptive
This project seeks to deploy an analytical framework to conduct population transcriptomics analyses for the purpose of identifying genomic signatures relating the adaptive (or maladaptive) potential of a population in relation to a particular environment. We will make use of existing yet diverse capability across the enterprise in order to create a... more more efficient method of assessing adaptive potential based on transcriptomics and identify regions of relevance in species from natural ecosystems. less
GeoGenetics software development
The GeoGenetics Wizard and friends: a platform that allows genomicists and ecologists to work together: it brings geospatial data to genomics and vice-versa. It uses OpenLayers, ExtJs and the Chado Natural Diversity database module.
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