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Digital Expression on the Web (DEW)

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About this Collection

Digital Expression on the Web (DEW)


The DEW pipeline is a one command line solution that aligns reads, corrects expression biases (eXpress), TMM normalizes (edgeR) and produces FPKM values that are then visualized with pretty ggplot graphics. This BZ2-compressed tar archive provides the software and licensing statements. DEW is written in Perl and requires a SQLite database and is s... more


Bioinformatics Genomics


https://doi.org/10.4225/08/54AB816944E07


CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400

transcriptomics


LICENSE


Author: Alexie Papanicolaou CSIRO Ecosystem Sciences alexie@butterflybase.org


CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)


CSIRO (Australia), University of Western Sydney (Australia)


Papanicolaou, Alexie (2014): Digital Expression on the Web (DEW). v1. CSIRO. Software Collection. https://doi.org/10.4225/08/54AB816944E07


All Rights (including copyright) CSIRO Australia 2014.


The metadata and files (if any) are available to the public.

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More about this Collection

Perl


Perl


Linux 64bit


RC2


About this Project

Cont to TCP01 Dissecting Adaptive


This project seeks to deploy an analytical framework to conduct population transcriptomics analyses for the purpose of identifying genomic signatures relating the adaptive (or maladaptive) potential of a population in relation to a particular environment. We will make use of existing yet diverse capability across the enterprise in order to create a... more


Owain Edwards


transcriptomics software development


Production of software for the analysis of high throughput transcriptomics data


Analysis


Alexie Papanicolaou


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