Just_Annotate_My_proteins (JAMp)

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About this Collection

Just_Annotate_My_proteins (JAMp)

Whether working on a model or non-model species for biomedical, economical or evolutionary research, next-generation sequencing has enabled biologists to rapidly generate a reference sequence for downstream applications and hypotheses generation. With the exception of a limited number of species, functional annotation is conducted by in-silico expe... more

Bioinformatics Genomics

CSIRO Enquiries
1300 363 400

genome annotation


Author: Alexie Papanicolaou and Temi Varghese (ExtJS viewer) CSIRO Ecosystem Sciences

CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)

Broad Institute (United States), CSIRO (Australia), University of Western Sydney (Australia)

Papanicolaou, Alexie; Varghese, Temi (2014): Just_Annotate_My_proteins (JAMp). v1. CSIRO. Software Collection.

All Rights (including copyright) CSIRO Australia 2014.

The metadata and files (if any) are available to the public.

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More about this Collection

Apache web server; PHP; perl

Perl; PHP; JavaScript

Linux 64bit


About this Project

Cont to TCP01 Dissecting Adaptive

This project seeks to deploy an analytical framework to conduct population transcriptomics analyses for the purpose of identifying genomic signatures relating the adaptive (or maladaptive) potential of a population in relation to a particular environment. We will make use of existing yet diverse capability across the enterprise in order to create a... more

Owain Edwards

genome annotation software development

The JAMg software was created to address the issue of creating gene models (feature annotation) and was built by Alexie Papanicolaou at the Commonwealth Scientific and Industrial Research Organisation (CSIRO) with some brilliant support from Brian Haas at the Broad Institute. The software and manual are written so that to guide the annotation proce... more


Alexie Papanicolaou

Temi Varghese

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