Just_Annotate_My_proteins (JAMp)
Whether working on a model or non-model species for biomedical, economical or evolutionary research, next-generation sequencing has enabled biologists to rapidly generate a reference sequence for downstream applications and hypotheses generation. With the exception of a limited number of species, functional annotation is conducted by in-silico expe... moreriments based on sequence similarity. Some groups are also enriching their data with expression studies. JAMp is a platform that allows biologists to reclaim the analysis of transcript reconstruction experiments by providing an automated process for generating functional annotations and a user-friendly overview of these in-silico experiments. The entire software is built so that novice command-line users can take a transcriptome assembly and generate websites like those found in our demo.
This BZ2-compressed tar archive provides the software, HTML documentation and licensing statements. The expanded folder tree requires at about 0.5 GB of disk space. JAMp software is written in JavaScript, Perl, PHP, requires a postgres database and is supported for Linux 64-bit computers. See the homepage at http://jamps.sourceforge.net for new versions.
less
Bioinformatics
;
Genomics
https://doi.org/10.4225/08/54AB80F48C389
CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400
genome annotation
LICENSE
Author: Alexie Papanicolaou and Temi Varghese (ExtJS viewer)
CSIRO Ecosystem Sciences
alexie@butterflybase.org
CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)
Broad Institute (United States), CSIRO (Australia), University of Western Sydney (Australia)
Papanicolaou, Alexie; Varghese, Temi (2014): Just_Annotate_My_proteins (JAMp). v1. CSIRO. Software Collection.
https://doi.org/10.4225/08/54AB80F48C389
All Rights (including copyright) CSIRO Australia 2014.
The metadata and files (if any) are available to the public.
Click here to view this collection in the new DAP user interface
