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Just Annotate My Genome (JAMg)

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About this Collection

Just Annotate My Genome (JAMg)


An increased number of genomes are being made public but few individual research are willing to take ownership of their own data. Indeed, the current model is for genome sequences to be handled by sequencing centers or large bioinformatic repositories (RefSeq or Ensembl). Even though using these widely used and standardized repositories and center ... more


Bioinformatics Genomics


https://doi.org/10.4225/08/54AB80F5105DE


CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400

software genome annotation


LICENSE


Alexie Papanicolaou 1 CSIRO Ecosystem Sciences, GPO 1700, Canberra 2601, Australia alexie@butterflybase.org


CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)


Broad Institute (United States), CSIRO (Australia), University of Western Sydney (Australia)


Papanicolaou, Alexie (2014): Just Annotate My Genome (JAMg). v1. CSIRO. Software Collection. https://doi.org/10.4225/08/54AB80F5105DE


All Rights (including copyright) CSIRO Australia 2014.


The metadata and files (if any) are available to the public.

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More about this Collection

Perl


Perl


Linux 64bit


RC5


About this Project

Cont to TCP01 Dissecting Adaptive


This project seeks to deploy an analytical framework to conduct population transcriptomics analyses for the purpose of identifying genomic signatures relating the adaptive (or maladaptive) potential of a population in relation to a particular environment. We will make use of existing yet diverse capability across the enterprise in order to create a... more


Owain Edwards


genome annotation software development


The JAMg software was created to address the issue of creating gene models (feature annotation) and was built by Alexie Papanicolaou at the Commonwealth Scientific and Industrial Research Organisation (CSIRO) with some brilliant support from Brian Haas at the Broad Institute. The software and manual are written so that to guide the annotation proce... more


Analysis


Alexie Papanicolaou


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