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Identification of genic SSRs and SNPs from de novo transcriptome assembly of Chinese tallow (Triadica sebifera)

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About this Collection

Identification of genic SSRs and SNPs from de novo transcriptome assembly of Chinese tallow (Triadica sebifera)


Transcriptome assembly of reads generated individually from the fruit coat, tallow and seed tissues of Chinese tallow fruits harvested at stage 4 (before maturity). The un-assembled reads from individual tissues were deposited at NCBI-Short Read Archive under accession numbers SRR1653572, SRR1653574 and SRR1653576. The assembled transcripts were ex... more


Gene Expression (incl. Microarray and other genome-wide approaches)


https://doi.org/10.4225/08/54851EEE5F452


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Chinese tallow transcriptome molecular markers SSR SNP


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Chinese tallow trancriptome assembly


CSIRO Data Licence


CSIRO (Australia)


Divi, Uday (2014): Identification of genic SSRs and SNPs from de novo transcriptome assembly of Chinese tallow (Triadica sebifera). v2. CSIRO. Data Collection. https://doi.org/10.4225/08/54851EEE5F452


All Rights (including copyright) CSIRO Australia 2014.


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About this Project

CLSD EF-RP3 CDF25.1 CESRE TSOP 2013/2014


PROJECT TITLE Understanding tallow tissue development: defining regulatory gene networks for non-seed lipid accumulating tissues. DESCRIPTION Oil in the form of triacylglycerol (TAG) is the major storage compound for fatty acids (FAs) and is the most energy-dense storage form of reduced carbon in many species (Durrett et al., 2008). Unlike most pl... more


Surinder Singh


Data mining for identification of molecular markers from de novo assembled trancriptome


The Chinese tallow transcriptome sequences (http://dx.doi.org/10.4225/08/547D1BF0EF9FD) were analyzed for identification of Simple Sequence Repeats (SSRs) using MicroSAtellite(MISA) software. Sequnces with mmore than 150 bp flaking regions available were selected to design primers using Primer 3 -2.3.4). SOAPsnp, a member of the SOAP (Short Oligonu... more


Analysis


Uday Divi


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