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Eukaryote Composition SE Queensland 2010

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About this Collection

Eukaryote Composition SE Queensland 2010


125 samples of benthic eukaryotic communities from SE Queensland. Samples were collected from the Noosa, Maroochydore, Pine, Logan and Currumbin estuaries in February 2010. Five sites per estuary, with 5 samples per site. 18S rRNA using the following primers: All18SF-TGGTGCATGGCCGTTCTTAGT and All18SR-CATCTAAGGGCATCACAGACC


Environmental Impact Assessment


https://doi.org/10.4225/08/52DF4D8008B99


10 Feb 2010


03 Mar 2010


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CSIROEnquiries@csiro.au
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Metabarcoding ecogenomics 18S rDNA, amplicon estuary sediment


DNA was extracted from 1 g of sediment for each sample. Data was produced using one plate of 454 GFLX Titanium. The provided data was processed using Amplicon Pyrosequence Denoising Program (ADPD) (Morgan et al. 2012). Taxonomy was inferred using the RDP classifier with the SILVA 18S rRNA database (release 113) .


Anthony Chariton


CSIRO Data Licence


CSIRO (Australia)


Chariton, Anthony (2014): Eukaryote Composition SE Queensland 2010. v1. CSIRO. Data Collection. https://doi.org/10.4225/08/52DF4D8008B99


All Rights (including copyright) CSIRO Australia 2014.


The metadata and files (if any) are available to the public.

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About this Project

1177.2 Estuarine Health Assessment


Metabarcoding of Copper Contaminated Sediments


Anthony Chariton


Experiment


Manipulative experiment using whole benthic communities obtained from an estuary in Rhode Island, USA.


Experiment


Roche 454 FLX Titanium


Anthony Chariton


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