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Global Bemisia dataset release version 15 May 2017

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About this Collection

Global Bemisia dataset release version 15 May 2017


THIS IS THE NEW REVISED VERSION. Mitochondrial cytochrome oxidase subunit one gene, partial cds, sequence data. The dataset was compiled to help researchers wanting to undertake a phylogenetic analysis of the Bemisia tabaci species complex; to assign unknowns to already identified members of the Bemisia tabaci species complex or to identify putativ... more


Crop and Pasture Protection (Pests, Diseases and Weeds)


https://doi.org/10.4225/08/591a4018dfca8


31 Dec 2012


14 May 2017


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Bemisia tabaci mitochondrial cytochtome oxidase one mtCOI


THIS IS THE NEW REVISED VERSION. Mitochondrial cytochrome oxidase subunit one gene, partial cds, sequence data. The dataset was compiled to help researchers wanting to undertake a phylogenetic analysis of the Bemisia tabaci species complex; to assign unknowns to already identified members of the Bemisia tabaci species complex or to identify putative new species belonging to the complex. All sequences are available publicly through GenBank and all accession numbers are included. The original dataset contained 558 Bemisia tabaci plus outgroup sequences. This version contains 544 as 14 erroneous sequences have been removed. The sequences are 657 bases in length starting with GAAAATTAGAGGT (using Middle East-Asia Minor 1 DQ174535 as the alignment template) and were aligned using ClustalX (ver. 1.81) according to Thompson et al. (1997). There are two files. The unaligned version contains all sequences as downloaded from GenBank 14 May 2017. The aligned version has been trimmed to 657 bases and two sequences that were in the reverse compliment orientation when downloaded from GenBank have been put into the correct orientation. There have been no further changes to the data.


Bemisia tabaci species complex mitochondrial cytochrome oxidase I dataset compiled by Laura Boykin (laura.boykin@uwa.edu.au) and Paul De Barro (paul.debarro@csiro.au). THIS IS THE NEW REVISED VERSION (15 MAY 2017)


Creative Commons Attribution 4.0 International Licence


CSIRO (Australia)


De Barro, Paul; Boykin, Laura (2013): Global Bemisia dataset release version 15 May 2017. v3. CSIRO. Data Collection. https://doi.org/10.4225/08/591a4018dfca8


All Rights (including copyright) CSIRO 2013.


The metadata and files (if any) are available to the public.

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About this Project

Acquired


Bemisia tabaci phylogenetics


Ongoing gloabl investigation of the Bemisia tabaci species complex


Analysis


Paul De Barro


Laura Boykin