18S rDNA pyrosequenced data from Triclosan Spiked Experiment

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About this Collection

18S rDNA pyrosequenced data from Triclosan Spiked Experiment

Roche 454 FLX Titanium produced 18S rDNA amplicons derived from an experiment which examined the vertical migration of benthic biota through triclosan contaminated surficial sediments. The primers used were 18S SSU_F04 (5’-GCTTGTCTCAAAGATTAAGCC-3’) and 18S SSU_R22 (5’-GCCTGCTGCCTTCCTTGGA-3’) The study contained four tr... more

Environmental Impact Assessment

20 Oct 2012

CSIRO Enquiries
1300 363 400

ecogenomics triclosan 18S rDNA metabarcoding pyrosequencing estuarine sediments

Data was processed using Qiime and UCLUST.

Anthony A. Chariton†*, Kay T. Ho‡, Dina Proestou‡, Holly Bik#, Stuart L. Simpson†, Lisa M. Portis‡, Mark Cantwell‡, Jeffrey G. Baguley §, Robert M. Burgess‡, Marguerite Pelletier‡, Monique Perron‡, Claudia Gunsch|| Holly Bik# †CSIRO Land and Water, Lucas Heights, NSW Australia ‡Atlantic Ecology Division, US Environmental Protection Agency, Narragansett, RI USA # UC Davis Genome Center, Davis, CA USA §Department of Biology, University of Nevada, Reno, NV USA || Civil and Environmental Engineering Department, Duke University, Durham, NC USA

CSIRO Data Licence

CSIRO (Australia), USEPA (United States)

CSIRO (2012): 18S rDNA pyrosequenced data from Triclosan Spiked Experiment. v1. CSIRO. Data Collection.

All Rights Reserved (including copyright) CSIRO Australia, USEPA 2012.

The metadata and files (if any) are available to the public.

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About this Project

1177.2 Estuarine Health Assessment

Metabarcoding of Copper Contaminated Sediments

Anthony Chariton


Manipulative experiment using whole benthic communities obtained from an estuary in Rhode Island, USA.


Roche 454 FLX Titanium


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