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18S rDNA pyrosequenced data from Triclosan Spiked Experiment

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About this Collection

18S rDNA pyrosequenced data from Triclosan Spiked Experiment


Roche 454 FLX Titanium produced 18S rDNA amplicons derived from an experiment which examined the vertical migration of benthic biota through triclosan contaminated surficial sediments. The primers used were 18S SSU_F04 (5’-GCTTGTCTCAAAGATTAAGCC-3’) and 18S SSU_R22 (5’-GCCTGCTGCCTTCCTTGGA-3’) The study contained four tr... more


Environmental Impact Assessment


https://doi.org/10.4225/08/518136D7EF1A8


20 Oct 2012


CSIRO Enquiries
CSIROEnquiries@csiro.au
1300 363 400

ecogenomics triclosan 18S rDNA metabarcoding pyrosequencing estuarine sediments


Data was processed using Qiime and UCLUST.


Anthony A. Chariton†*, Kay T. Ho‡, Dina Proestou‡, Holly Bik#, Stuart L. Simpson†, Lisa M. Portis‡, Mark Cantwell‡, Jeffrey G. Baguley §, Robert M. Burgess‡, Marguerite Pelletier‡, Monique Perron‡, Claudia Gunsch|| Holly Bik# †CSIRO Land and Water, Lucas Heights, NSW Australia ‡Atlantic Ecology Division, US Environmental Protection Agency, Narragansett, RI USA # UC Davis Genome Center, Davis, CA USA §Department of Biology, University of Nevada, Reno, NV USA || Civil and Environmental Engineering Department, Duke University, Durham, NC USA


CSIRO Data Licence


CSIRO (Australia), USEPA (United States)


CSIRO (2012): 18S rDNA pyrosequenced data from Triclosan Spiked Experiment. v1. CSIRO. Data Collection. https://doi.org/10.4225/08/518136D7EF1A8


All Rights Reserved (including copyright) CSIRO Australia, USEPA 2012.


The metadata and files (if any) are available to the public.

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About this Project

1177.2 Estuarine Health Assessment


Metabarcoding of Copper Contaminated Sediments


Anthony Chariton


Experiment


Manipulative experiment using whole benthic communities obtained from an estuary in Rhode Island, USA.


Experiment


Roche 454 FLX Titanium


CSIRO


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