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Allele frequencies between Bos taurus and Bos indicus

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About this Collection

Allele frequencies between Bos taurus and Bos indicus


Data related to Naval-Sanchez et al. 2019 "Selection Signatures in heat-resistant cattle reveal missense mutations in damage response gene HELB". Samples: Whole genome sequences from the 1000 Bull Genomes Project (Run6, Bos taurus, and Bos indicus) for breeds chosen as a reference for imputation were retrieved (Daetwyler et al. 2014; Haye... more


Animal Breeding Genomics Population, Ecological and Evolutionary Genetics


https://doi.org/10.25919/5ceb24e4ae2f8


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Alelle frequencies MAF >0.05 cattle Bos taurus Bos indicus


Mapping variant detection and imputation: Genetic variants from the sequenced animals were extracted and filtered to only keep bi-allelic variants with minimally four copies of the minor allele. Genomes of filtered variants were phased using Eagle (Loh et al. 2016) and imputed using FImpute 2.2 (Sargolzaei et al. 2014). The analysis resulted in the detection of 39,679,303 high-quality SNPs, being 24,080,747 considered common SNPs (MAF >=0.05).


Marina Naval-Sanchez, Laercio R. Porto-Neto, Ben J. Hayes, Hans d. Daetwyler, Antonio Reverter.


Creative Commons Attribution 4.0 International Licence


Agriculture Victoria, AgriBio, Centre for AgriBioscience (Australia), CSIRO (Australia), Queensland Alliance for Agriculture and Food Innovation, The University of Queensland (Australia), School of Applied Systems Biology, La Trobe University (Australia)


Naval Sanchez, Marina; Porto Neto, Laercio; Daetwyler, Hans; Hayes, Ben; Reverter-Gomez, Toni (2019): Allele frequencies between Bos taurus and Bos indicus. v2. CSIRO. Data Collection. https://doi.org/10.25919/5ceb24e4ae2f8


All Rights (including copyright) CSIRO 2019.


The metadata and files (if any) are available to the public.

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More about this Collection

Bos primigenous taurus; Bos primingenous indicus


cow; cattle;










About this Project

Genomic Analytics in the Realm of Big Data (OCE Post-Doc)


SELECTION SIGNATURES IN HEAT-RESISTANT CATTLE REVEAL MISSENSE MUTATIONS IN DAMAGE RESPONSE GENE HELB Distinct domestication events, adaptation to different climatic zones and divergent selection in productive traits have shaped the genomic differences between taurine and indicine cattle. Here we assessed the impact of artificial selection and envi... more


Toni Reverter-Gomez





Marina Naval Sanchez


Laercio Porto Neto


Hans Daetwyler


Ben Hayes


Toni Reverter-Gomez