Peak detection and alignment of GCMS data

Collection Title:

Peak detection and alignment of GCMS data

Collection Description:

This collection contains the peak detection and alignment results of: -- plasmodium falciparum CHMI trial -- plasmodium vivax CHMI trial -- healthy control experiment The peaks were extracted from csv files contained in https://data.csiro.au/dap/landingpage?pid=csiro:38977 For each data set, the original data is either used as raw and/or normali... moresed by the standard chemical 2-Hexanone (measured at the beginning of each day). For peak detection, a noise threshold of 10 was used on all data sets. For the CHMI trials, the breath data and ambient air data were processed separately. less

Field of Research:

Medicinal and Biomolecular Chemistry not elsewhere classified ;  Pattern Recognition and Data Mining

DOI:

https://doi.org/10.25919/5ca206252fa3b

Start Date:

Nov 2016

End Date:

Jun 2017

Contact:CSIRO Enquiries
 CSIROEnquiries@csiro.au
 1300 363 400
Keywords:

GCMS ;  peak detection ;  peak alignment ;  breath ;  malaria ;  P.falciparum ;  P.vivax ;  biomarkers ;  diagnosis ;  controlled human malaria infection (CHMI) ;  volatile organic compounds (VOC) ;  mass spectrometry ;  gas chromatography ;  healthy control

Lineage:

Peak detection and alignment processes were described in Berna et al. (https://doi.org/10.1088/1752-7163/aadbbb). The code for peak detection is available at https://github.com/rosalind-wang/GCPeakDetection

Licence:

CSIRO Data Licence

Organisations:

CSIRO (Australia)

Attribution Statement:

Wang, Rosalind (2019): Peak detection and alignment of GCMS data. v1. CSIRO. Data Collection. https://doi.org/10.25919/5ca206252fa3b

Rights Statement:

All Rights (including copyright) CSIRO 2019.

Access:

The metadata and files (if any) are available to the public.