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Peak detection and alignment of GCMS data
This collection contains the peak detection and alignment results of:
-- plasmodium falciparum CHMI trial
-- plasmodium vivax CHMI trial
-- healthy control experiment
The peaks were extracted from csv files contained in https://data.csiro.au/dap/landingpage?pid=csiro:38977
For each data set, the original data is either used as raw and/or normali... moresed by the standard chemical 2-Hexanone (measured at the beginning of each day). For peak detection, a noise threshold of 10 was used on all data sets. For the CHMI trials, the breath data and ambient air data were processed separately. less
Medicinal and Biomolecular Chemistry not elsewhere classified
Pattern Recognition and Data Mining
controlled human malaria infection (CHMI)
volatile organic compounds (VOC)
Peak detection and alignment processes were described in Berna et al. (https://doi.org/10.1088/1752-7163/aadbbb). The code for peak detection is available at https://github.com/rosalind-wang/GCPeakDetection
CSIRO Data Licence
Wang, Rosalind (2019): Peak detection and alignment of GCMS data. v1. CSIRO. Data Collection.
All Rights (including copyright) CSIRO 2019.
The metadata and files (if any) are available to the public.
Novel sensor and biomarkers for diagnosis of malaria using human breath
The project aimed to validate the utility of the thioether compounds for diagnosis of diverse and naturally acquired malaria infections. We aimed to repeat a research clinic-based breath collection experiment in one of the ongoing Controlled Human Malaria Infection studies, with a much-increased density of breath collection.
Results for publication