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Quail Thrush (Cinclosoma) whole genome raw sequence reads (Illumina)

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About this Collection

Quail Thrush (Cinclosoma) whole genome raw sequence reads (Illumina)


125 bp paired-end Illumina HiSeq 2500 v4.0 NGS sequence reads for 72 individually indexed Cinclosoma specimens (by mitochondrial data composed of C. castanotum [4], C. clarum [43], C. fordianum [23], and one each of C. punctatum and C. cinnamomeum alisteri as outgroups). This sequence data forms the basis of a biogeographic population genomics stud... more


Biogeography and Phylogeography Biological Adaptation Genomics Molecular Evolution Population, Ecological and Evolutionary Genetics


https://doi.org/10.25919/5b70dc3a7ecf7


12 Aug 1902


02 Apr 2008


Kerensa McElroy
Kerensa.Mcelroy@csiro.au

Quail Thrush Cinclosoma population genomics biogeography NGS


DNA was extracted from toe pads of voucher specimens housed at the Australian National Wildlife Collection, the Western Australian Museum, and the South Australian Museum. Library preparation was performed in-house using a modified version of the Meyer-Kircher protocol. Full details of DNA extraction and library preparation methods may be found here:


Australian National Wildlife Collection Western Australian Museum South Australian Museum Atlas of Living Australia occurrence download at https://biocache.ala.org.au/occurrences/search?&q=qid%3A1529977369020&fq=%28taxon_name%3A%22Cinclosoma+%28Cinclosoma%29+punctatum%22+OR+taxon_name%3A%22Cinclosoma+%28Malleeavis%29+castanotum%22+OR+taxon_name%3A%22Cinclosoma+%28Malleeavis%29+clarum%22+OR+taxon_name%3A%22Cinclosoma+%28Samuela%29+cinnamomeum+alisteri%22%29&qc=data_hub_uid%3Adh1 accessed on Tue Jun 26 11:45:18 AEST 2018.


CSIRO Data Licence


CSIRO (Australia), Western Australian Museum (Australia), South Australian Museum (Australia)


McElroy, Kerensa (2018): Quail Thrush (Cinclosoma) whole genome raw sequence reads (Illumina). v1. CSIRO. Data Collection. https://doi.org/10.25919/5b70dc3a7ecf7


All Rights (including copyright) CSIRO 2018.


The metadata and files (if any) are available to the public.

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Location Details

24°17′26.988″ S


35°21′11.16″ S


150°12′52.92″ E


113°42′0″ E


WGS84


More about this Collection

Cinclosoma


Quail Thrush


ANIMALIA


CHORDATA


AVES


PASSERIFORMES


PSOPHODIDAE


Cinclosoma



Species include C. clarum, C. fordianum, C. castanotum, C. punctatum, C. cinnamomeum alisteri


About this Project

OCE Postdoc Evolutionary Rescue a


Genomic technologies give increased power for understanding the dynamics of speciation. Complex patterns are emerging in the speciation history of the southern Australian bird known as Quail-thrush (Aves: Passeriformes: Cinclosoma). Analysis of mitochondrial and nuclear genes previous affirmed three species, C. castanotum in the east of the range, ... more


Leo Joseph


Quail-thrush Population Genomics and Biogeography


Generation and analysis of whole-genome DNA sequence data for Quail-thrush museum specimens, for the purpose of resolving the speciation history and adaptive influences of this Australian bird.


Analysis


@HISEQ:145:C8KKRANXX:8 @HISEQ:169:C9U18ANXX:8


Kerensa McElroy


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