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Hieracium Laser Captured Cell Type RNASeq Resource

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About this Collection

Hieracium Laser Captured Cell Type RNASeq Resource


A collection of raw and analysed sequence resources of three ovule cell types; enlarging aposporous initial cells, early aposporous embryo sacs and somatic ovule cells in apomictic Hieracium praealtum. This collection was generated by the Asexual Seed Formation research team in CSIRO led by Anna Koltunow. This data collection supports the publicati... more


Gene Expression (incl. Microarray and other genome-wide approaches) Genomics Plant Developmental and Reproductive Biology


https://doi.org/10.4225/08/5b0f8c8a868ca


2014


2018


Anna Koltunow
Anna.Koltunow@csiro.au

Apomixis Hieracium Apospory Asexual, LCM


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Hieracium Genome Resource

Attribution
:

Hieracium D18 genome browser

:

Hieracium sequence BLAST service


Detailed methods describing the generation of the resource, the cell types used in the resource and analytical methods are published in this publication and cited references contained within. Generation of the laser captured cell transcriptomes resource, in combination with previously published integrated Hieracium survey genomic and transcriptome resource (Rabiger et al., 2016), enables exploration of transcriptional signatures in aposporous initial cell. Martina Juranić, Matthew R. Tucker , Carolyn J. Schultz, Neil J. Shirley, Jennifer M. Taylor, Andrew Spriggs, Susan D. Johnson, Vincent Bulone and Anna M.G. Koltunow* Plant Physiology 2018


Asexual Seed Formation Team, CSIRO Developed in CSIRO OCE postdoctoral fellowships awarded to and supervised by Anna Koltunow


CSIRO Data Licence


CSIRO (Australia)


Juranic, Martina; Koltunow, Anna; Johnson, Susan; Spriggs, Andrew; Taylor, Jen (2018): Hieracium Laser Captured Cell Type RNASeq Resource. v1. CSIRO. Data Collection. https://doi.org/10.4225/08/5b0f8c8a868ca


All Rights (including copyright) CSIRO 2018.


The metadata and files (if any) are available to the public.

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About this Project

OCE, PDF, KOL014-RAB018, Switching betwe


The development and analysis of a genomic and transcriptome resource for Hieracium, a model for apomixis. This includes the characterisation of small RNA profiles and small RNA pathway members such as Argonautes. As well as single cell transcriptomes.


Anna Koltunow


Development and Characterisation of Hieracium Genomics Resource


Data resource supporting the publication of the generation and analysis of a large genomic and transcriptomic sequence resource for the study of apomixis within the model plant Hieracium. This resource supports the analysis of relevant developmental stages in seed formation and within key genotypes and subspecies of the Hieracium model to provide i... more


Experiment


Martina Juranic


Anna Koltunow


Susan Johnson


Andrew Spriggs


Jen Taylor


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