Tasmanian salmon genotyping

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About this Collection

Tasmanian salmon genotyping

SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed.

Aquaculture Genomics

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Salmon Salmo salar variant discovery

100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using BWA. Variants called using GATK tools. Doulbe haploid SNPs removed.

CSIRO Data Licence

CSIRO (Australia)

Kijas, James; McWilliam, Sean (2017): Tasmanian salmon genotyping. v2. CSIRO. Data Collection.

All Rights (including copyright) CSIRO 2017.

The metadata and files (if any) are available to the public.

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More about this Collection

Salmo salar

Atlantic Salmon







Salmo salar

About this Project

SIP 52 Salmon Genome & Tailored tools fo

This projects collected genomic data from 19 Atlantic salmon sampled from the Tasmanian breeding program. Whole genome sequence was collected to a depth of 30 fold coverage before SNP discovery identified a final collection of approximately 9 million loci. The data was used to explore divergence from both North American and European Atlantic salmo... more

James Kijas

James Kijas

Sean McWilliam

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