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Digital Expression on the Web (DEW)
The DEW pipeline is a one command line solution that aligns reads, corrects expression biases (eXpress), TMM normalizes (edgeR) and produces FPKM values that are then visualized with pretty ggplot graphics.
This BZ2-compressed tar archive provides the software and licensing statements. DEW is written in Perl and requires a SQLite database and is s... moreupported for Linux 64-bit computers. The homepage of the software can be found at http://dew.sourceforge.net. less
Author: Alexie Papanicolaou
CSIRO Ecosystem Sciences
CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)
CSIRO (Australia), University of Western Sydney (Australia)
Papanicolaou, Alexie (2014): Digital Expression on the Web (DEW). v1. CSIRO. Software Collection.
All Rights (including copyright) CSIRO Australia 2014.
The metadata and files (if any) are available to the public.
Cont to TCP01 Dissecting Adaptive
This project seeks to deploy an analytical framework to conduct population transcriptomics analyses for the purpose of identifying genomic signatures relating the adaptive (or maladaptive) potential of a population in relation to a particular environment. We will make use of existing yet diverse capability across the enterprise in order to create a... more more efficient method of assessing adaptive potential based on transcriptomics and identify regions of relevance in species from natural ecosystems. less
transcriptomics software development
Production of software for the analysis of high throughput transcriptomics data
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